Package: SoyNAM 1.6.2

SoyNAM: Soybean Nested Association Mapping Dataset

Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB). BLUP function formats data for genome-wide prediction and association analysis.

Authors:Alencar Xavier, William Beavis, James Specht, Brian Diers, Rouf Mian, Reka Howard, George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale, Perry Cregan, Qijian Song, Miguel Lopez, William Muir, Katy Rainey.

SoyNAM_1.6.2.tar.gz
SoyNAM_1.6.2.zip(r-4.5)SoyNAM_1.6.2.zip(r-4.4)SoyNAM_1.6.2.zip(r-4.3)
SoyNAM_1.6.2.tgz(r-4.4-x86_64)SoyNAM_1.6.2.tgz(r-4.4-arm64)SoyNAM_1.6.2.tgz(r-4.3-x86_64)SoyNAM_1.6.2.tgz(r-4.3-arm64)
SoyNAM_1.6.2.tar.gz(r-4.5-noble)SoyNAM_1.6.2.tar.gz(r-4.4-noble)
SoyNAM_1.6.2.tgz(r-4.4-emscripten)SoyNAM_1.6.2.tgz(r-4.3-emscripten)
SoyNAM.pdf |SoyNAM.html✨
SoyNAM/json (API)

# Install 'SoyNAM' in R:
install.packages('SoyNAM', repos = c('https://alenxav.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/alenxav/soynam/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

3.18 score 1 stars 4 scripts 271 downloads 3 mentions 4 exports 21 dependencies

Last updated 3 years agofrom:ff2243ced4. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 10 2024
R-4.5-win-x86_64NOTENov 10 2024
R-4.5-linux-x86_64NOTENov 10 2024
R-4.4-win-x86_64NOTENov 10 2024
R-4.4-mac-x86_64NOTENov 10 2024
R-4.4-mac-aarch64NOTENov 10 2024
R-4.3-win-x86_64NOTENov 10 2024
R-4.3-mac-x86_64NOTENov 10 2024
R-4.3-mac-aarch64NOTENov 10 2024

Exports:BLUPENVgwnammrr

Dependencies:bootcligluelatticelifecyclelme4magrittrMASSMatrixminqaNAMnlmenloptrplyrRcppRcppEigenreshape2rlangstringistringrvctrs

Readme and manuals

Help Manual

Help pageTopics
Soybean Nested Association Mapping DatasetSoyNAM-package
Best Linear Unbias PredictorBLUP ENV gwnam mrr
Datasetsdata.check data.check.in data.check.qa data.line data.line.in data.line.qa gen.in gen.qa gen.raw soybase soynam