Package: SoyNAM 1.6.2

SoyNAM: Soybean Nested Association Mapping Dataset

Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB). BLUP function formats data for genome-wide prediction and association analysis.

Authors:Alencar Xavier, William Beavis, James Specht, Brian Diers, Rouf Mian, Reka Howard, George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale, Perry Cregan, Qijian Song, Miguel Lopez, William Muir, Katy Rainey.

SoyNAM_1.6.2.tar.gz
SoyNAM_1.6.2.zip(r-4.5)SoyNAM_1.6.2.zip(r-4.4)SoyNAM_1.6.2.zip(r-4.3)
SoyNAM_1.6.2.tgz(r-4.5-x86_64)SoyNAM_1.6.2.tgz(r-4.5-arm64)SoyNAM_1.6.2.tgz(r-4.4-x86_64)SoyNAM_1.6.2.tgz(r-4.4-arm64)SoyNAM_1.6.2.tgz(r-4.3-x86_64)SoyNAM_1.6.2.tgz(r-4.3-arm64)
SoyNAM_1.6.2.tar.gz(r-4.5-noble)SoyNAM_1.6.2.tar.gz(r-4.4-noble)
SoyNAM_1.6.2.tgz(r-4.4-emscripten)SoyNAM_1.6.2.tgz(r-4.3-emscripten)
SoyNAM.pdf |SoyNAM.html✨
SoyNAM/json (API)

# Install 'SoyNAM' in R:

install.packages('SoyNAM', repos = c('https://alenxav.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alenxav/soynam/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

data.check - Datasets
data.check.in - Datasets
data.check.qa - Datasets
data.line - Datasets
data.line.in - Datasets
data.line.qa - Datasets
gen.in - Datasets
gen.qa - Datasets
gen.raw - Datasets

On CRAN:

cpp

3.18 score 1 stars 4 scripts 278 downloads 3 mentions 4 exports 24 dependencies

Last updated 3 years agofrom:ff2243ced4. Checks:1 OK, 10 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 08 2025
R-4.5-win-x86_64	NOTE	Feb 08 2025
R-4.5-mac-x86_64	NOTE	Feb 08 2025
R-4.5-mac-aarch64	NOTE	Feb 08 2025
R-4.5-linux-x86_64	NOTE	Feb 08 2025
R-4.4-win-x86_64	NOTE	Feb 09 2025
R-4.4-mac-x86_64	NOTE	Feb 08 2025
R-4.4-mac-aarch64	NOTE	Feb 08 2025
R-4.3-win-x86_64	NOTE	Feb 09 2025
R-4.3-mac-x86_64	NOTE	Feb 08 2025
R-4.3-mac-aarch64	NOTE	Feb 08 2025

Exports:BLUP ENV gwnam mrr

Dependencies:boot cli glue lattice lifecycle lme4 magrittr MASS Matrix minqa NAM nlme nloptr plyr rbibutils Rcpp RcppEigen Rdpack reformulas reshape2 rlang stringi stringr vctrs

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Soybean Nested Association Mapping Dataset	SoyNAM-package
Best Linear Unbias Predictor	BLUP ENV gwnam mrr
Datasets	data.check data.check.in data.check.qa data.line data.line.in data.line.qa gen.in gen.qa gen.raw soybase soynam