Package: SoyNAM 1.6.2

SoyNAM: Soybean Nested Association Mapping Dataset

Genomic and multi-environmental soybean data. Soybean Nested Association Mapping (SoyNAM) project dataset funded by the United Soybean Board (USB). BLUP function formats data for genome-wide prediction and association analysis.

Authors:Alencar Xavier, William Beavis, James Specht, Brian Diers, Rouf Mian, Reka Howard, George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale, Perry Cregan, Qijian Song, Miguel Lopez, William Muir, Katy Rainey.

SoyNAM_1.6.2.tar.gz
SoyNAM_1.6.2.zip(r-4.7-x86_64)SoyNAM_1.6.2.zip(r-4.7-arm64)SoyNAM_1.6.2.zip(r-4.6-x86_64)SoyNAM_1.6.2.zip(r-4.6-arm64)SoyNAM_1.6.2.zip(r-4.5-x86_64)
SoyNAM_1.6.2.tgz(r-4.6-x86_64)SoyNAM_1.6.2.tgz(r-4.6-arm64)SoyNAM_1.6.2.tgz(r-4.5-x86_64)SoyNAM_1.6.2.tgz(r-4.5-arm64)
SoyNAM_1.6.2.tar.gz(r-4.7-arm64)SoyNAM_1.6.2.tar.gz(r-4.7-x86_64)SoyNAM_1.6.2.tar.gz(r-4.6-arm64)SoyNAM_1.6.2.tar.gz(r-4.6-x86_64)
SoyNAM_1.6.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SoyNAM/json (API)

# Install 'SoyNAM' in R:
install.packages('SoyNAM', repos = c('https://alenxav.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alenxav/soynam/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

3.48 score 2 stars 8 scripts 309 downloads 3 mentions 4 exports 24 dependencies

Last updated from:ff2243ced4. Checks:13 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE143
linux-devel-x86_64NOTE195
source / vignettesOK374
linux-release-arm64NOTE142
linux-release-x86_64NOTE187
macos-release-arm64NOTE215
macos-release-x86_64NOTE356
macos-oldrel-arm64NOTE220
macos-oldrel-x86_64NOTE388
windows-devel-arm64NOTE368
windows-devel-x86_64NOTE126
windows-release-arm64NOTE366
windows-release-x86_64NOTE135
windows-oldrel-x86_64NOTE126
wasm-releaseOK116

Exports:BLUPENVgwnammrr

Dependencies:bootcligluelatticelifecyclelme4magrittrMASSMatrixminqaNAMnlmenloptrplyrrbibutilsRcppRcppEigenRdpackreformulasreshape2rlangstringistringrvctrs

Readme and manuals

Help Manual

Help pageTopics
Soybean Nested Association Mapping DatasetSoyNAM-package
Best Linear Unbias PredictorBLUP ENV gwnam mrr
Datasetsdata.check data.check.in data.check.qa data.line data.line.in data.line.qa gen.in gen.qa gen.raw soybase soynam